0.15.3 (2023-07-20)

0.15.2 (2023-05-02)

0.15.1 (2023-04-13)

  • No changes, working around pypi isssue.

0.15.0 (2023-04-13)

0.14.16 (2022-10-04)

  • Fix small regression related to building URLs for client action mapping.

0.14.15 (2022-10-03)

  • Fix small regressions bugs in 0.14.14 - updating runner util code was bigger swap over than it seemed.

0.14.14 (2022-10-30)

0.14.13 (2021-12-06)

0.14.12 (2021-11-10)

  • Fixes to bring HOME and temp directory handling closer to Galaxy native runners.

  • Enable globbed from_work_dir outputs for remote metadata.

0.14.11 (2021-07-19)

0.14.10 (2021-07-17)

0.14.9 (2021-07-16)

  • Implement dynamic file sources abstraction for parsing files to transfer from galaxy.json files. Pull Request 269

  • Use tool classes to only test remote Galaxy tools. Pull Request 266

  • Run Galaxy framework tests against dev and master branches of Galaxy (thanks to @mvdbeek). Pull Request 264

0.14.8 (2021-07-14)

0.14.7 (2021-07-13)

0.14.6 (2021-05-24)

  • Fix for newer Galaxy tool profiles having isolated home directories.

0.14.5 (2021-04-15)

  • Potential fix for setting file actions via job destination parameters.

0.14.4 (2021-04-14)

  • Re-attempt release process - published wrong branch with 0.14.3.

0.14.3 (2021-04-13)

  • Allow transferring fewer files from Pulsar when using extended metadata with Galaxy.

0.14.2 (2021-02-15)

  • Fix the use of requests, limits, and walltime with coexecution pods. Pull Request 246

0.14.1 (2021-02-02)

0.14.0 (2020-09-17)

0.13.1 (2020-09-16)

  • Pinned all listed requirements. This is the final version of Pulsar to support Python 2.

0.13.0 (2019-06-25)

  • Various improvements and simplifications to Kubernetes job execution.

0.12.1 (2019-06-03)

  • Retry botched release that didn’t include all relevant commits.

0.12.0 (2019-06-03)

  • Revise Python Galaxy dependencies to use newer style Galaxy decomposition. galaxy-lib can no longer be installed in Pulsar’s environment, so you will likely need to rebuild your Pulsar virtualenv for this release. Pull Request 187

  • Add a Dockerfile for Pulsar with CVMFS (thanks to @nuwang and @afgane). Pull Request 166

  • Various small improvements to Kubernetes pod execution environment. Pull Request 190

  • Improve readme linting. Pull Request 186

  • Update example docs for Condor (thanks to @bgruening). Pull Request 189

0.11.0 (2019-05-16)

  • Implement staging Galaxy metadata input files in the client. 39de377

  • Fix ‘amqp_ack_republish_time’ in sample (thanks to @dannon). Pull Request 185

  • Updated amqp_url in job_conf_sample_mq_rsync.xml (thanks to @AndreasSko). Pull Request 184

  • Use wildcard char for pulsar version (thanks to @VJalili). Pull Request 181

  • Refactor toward more structured inputs. f477bc4

  • Refactor toward passing objectstore identifying information around. Pull Request 180

  • Rework imports for new Galaxy library structure. da086c9

  • Revert empty input testing, it really probably should cause a failure to transfer a non-existent file. 8bd5511

  • Better client mapper documentation. b6278b4

0.10.0 (2019-05-06)

  • Implement support for Kubernetes two container pod jobs - staging and tool execution as separate containers in the same job’s pod. Pull Request 176, Pull Request 178

0.9.1 (2019-05-01)

0.9.0 (2019-04-12)

  • Add configuration parameter to limit stream size read from disk. Pull Request 157

  • Pass full job status for failed and lost jobs. Pull Request 159

  • Improve message handling if problems occur during job setup/staging. Pull Request 160

  • Rework preprocessing job state to improve restartability and reduce job loss. This change should be applied while no jobs are running. Pull Request 164

  • Add support for overriding config through environment variables (thanks to @nuwang). Pull Request 165

  • Minor docs updates (thanks to @afgane). Pull Request 170

  • Python 3 fixes in Pulsar client (thanks to @mvdbeek). Pull Request 172

0.8.3 (2018-02-08)

  • Create universal wheels to enable Python 3 support when installing from PyPI (thanks to @nsoranzo). Pull Request 156

0.8.1 (2018-02-08)

0.8.0 (2017-09-21)

  • Support new features in Galaxy job running/scripting so that Pulsar respects $GALAXY_VIRTUAL_ENV and $PRESERVE_GALAXY_ENVIRONMENT. Fix remote metadata in cases where the tool environment changes the python on $PATH. Pull Request 137

  • Precreate Galaxy tool outputs on the remote before executing (fixes a bug related to missing output files on stage out). Pull Request 141

  • Support the remote_transfer file action without setting the jobs_directory destination param Pull Request 136

  • Fix invalid character in job managers documentation (thanks to @mapa17). Pull Request 130

  • Fix conda_auto_* option resolution and include a sample dependency_resolvers_conf.xml (thanks to @mapa17). Pull Request 132

  • Fix tox/Travis tests. Pull Request 138, Pull Request 139, Pull Request 140

  • Fix a bug with AMQP acknowledgement. Pull Request 143

0.7.4 (2017-02-07)

0.7.3 (2016-10-31)

0.7.2 (2016-08-31)

  • Fix bug causing loops on in response to preprocessing error conditions.

0.7.1 (2016-08-29)

  • Do a release to circumvent a tool version logic error in Galaxy ( released Galaxy versions think 0.7.0 < 0.7.0.dev3).

0.7.0 (2016-08-26)

  • Update Makefile to allow release pulsar as an application and a library for Galaxy at the same time.

  • Small update to test scripts for TravisCI changes.

  • Improvements for embedded Galaxy runner. (TODO: fill this out)

  • Remove support for Python 2.6. 60bf962

  • Update docs to describe project goverance and reuse Galaxy’s Code of Conduct. 7e23d43, dc47140

  • Updated cluster slots detection for SLURM from Galaxy. cadfc5a

  • Various changes to allow usage within Galaxy as a library. ce9d4f9

  • Various changes to allow embedded Pulsar managers within Galaxy. ce9d4f9, d262323, 8f7c04a

  • Introduce a separate working and metadata directory as required for Galaxy 16.04 that requires this separation. 6f4328e

  • Improve logging and comments. 38953f3, a985107, ad33cb9

  • Add Tox target for Python 2.7 unit testing. d7c524e

  • Add Makefile command for setup.py develop. fd82d00

0.6.1 (2015-12-23)

  • Tweak release process that left 0.6.0 with an incorrect PyPI description page.

0.6.0 (2015-12-23)

  • Pulsar now depends on the new galaxy-lib Python package instead of manually synchronizing Python files across Pulsar and Galaxy.

  • Numerous build and testing improvements.

  • Fixed a documentation bug in the code (thanks to @erasche). e8814ae

  • Remove galaxy.eggs stuff from Pulsar client (thanks to @natefoo). 00197f2

  • Add new logo to README (thanks to @martenson). abbba40

  • Implement an optional awknowledgement system on top of the message queue system (thanks to @natefoo). Pull Request 82 431088c

  • Documentation fixes thanks to @remimarenco. Pull Request 78, Pull Request 80

  • Fix project script bug introduced this cycle (thanks to @nsoranzo). 140a069

  • Fix config.py on Windows (thanks to @ssorgatem). Pull Request 84

  • Add a job manager for XSEDE jobs (thanks to @natefoo). 1017bc5

  • Fix pip dependency installation (thanks to @afgane) Pull Request 73

0.5.0 (2015-05-08)

  • Allow cURL downloader to resume transfers during staging in (thanks to @natefoo). 0c61bd9

  • Fix to cURL downloaders status code handling (thanks to @natefoo). 86f95ce

  • Fix non-wheel installs from PyPI. Issue 72

  • Fix mesos imports for newer versions of mesos (thanks to @kellrott). fe3e919

  • More, better logging. 2b3942d, fa2b6dc

0.4.0 (2015-04-20)

  • Python 3 support. Pull Request 62

  • Fix bug encountered when running pulsar-main and pulsar-config commands as scripts. 9d43ae0

  • Add pulsar-run script for issues commands against a Pulsar server (experimental). 3cc7f74

0.3.0 (2015-04-12)

  • Changed the name of project to Pulsar, moved to Github.

  • New RESTful web services interface.

  • SCP and Rsync file staging options added by E. Rasche. Pull Request

  • Allow YAML based configuration.

  • Support for more traditional pip/setup.py-style installs.

  • Dozens of smaller bugfixes and documentation updates.


  • Last version named the LWR - found on BitBucket.

  • Still supported in Galaxy as of 15.03 the release.

  • Introduced support for submitting to various queueing systems, operation as a Mesos framework, Docker support, and various other advanced deployment options.

  • Message queue support.

  • Framework for configurable file actions introduced.