History
0.15.1 (2023-04-13)
- No changes, working around pypi isssue.
0.14.16 (2022-10-04)
- Fix small regression related to building URLs for client action mapping.
0.14.15 (2022-10-03)
- Fix small regressions bugs in 0.14.14 - updating runner util code was bigger swap over
than it seemed.
0.14.12 (2021-11-10)
- Fixes to bring HOME and temp directory handling closer to Galaxy native runners.
- Enable globbed from_work_dir outputs for remote metadata.
0.14.9 (2021-07-16)
- Implement dynamic file sources abstraction for parsing files to transfer
from
galaxy.json files. Pull Request 269
- Use tool classes to only test remote Galaxy tools. Pull Request 266
- Run Galaxy framework tests against dev and master branches of Galaxy (thanks
to @mvdbeek). Pull Request 264
0.14.6 (2021-05-24)
- Fix for newer Galaxy tool profiles having isolated home directories.
0.14.5 (2021-04-15)
- Potential fix for setting file actions via job destination parameters.
0.14.4 (2021-04-14)
- Re-attempt release process - published wrong branch with 0.14.3.
0.14.3 (2021-04-13)
- Allow transferring fewer files from Pulsar when using extended metadata with
Galaxy.
0.14.2 (2021-02-15)
- Fix the use of requests, limits, and walltime with coexecution pods. Pull Request 246
0.13.1 (2020-09-16)
- Pinned all listed requirements. This is the final version of Pulsar to support Python 2.
0.13.0 (2019-06-25)
- Various improvements and simplifications to Kubernetes job execution.
0.12.1 (2019-06-03)
- Retry botched release that didn’t include all relevant commits.
0.12.0 (2019-06-03)
- Revise Python Galaxy dependencies to use newer style Galaxy decomposition.
galaxy-lib can no longer be installed in Pulsar’s environment, so you will
likely need to rebuild your Pulsar virtualenv for this release.
Pull Request 187
- Add a
Dockerfile for Pulsar with CVMFS (thanks to @nuwang and @afgane).
Pull Request 166
- Various small improvements to Kubernetes pod execution environment.
Pull Request 190
- Improve readme linting.
Pull Request 186
- Update example docs for Condor (thanks to @bgruening).
Pull Request 189
0.11.0 (2019-05-16)
- Implement staging Galaxy metadata input files in the client.
39de377
- Fix ‘amqp_ack_republish_time’ in sample (thanks to @dannon).
Pull Request 185
- Updated amqp_url in job_conf_sample_mq_rsync.xml (thanks to @AndreasSko).
Pull Request 184
- Use wildcard char for pulsar version (thanks to @VJalili).
Pull Request 181
- Refactor toward more structured inputs. f477bc4
- Refactor toward passing objectstore identifying information around.
Pull Request 180
- Rework imports for new Galaxy library structure. da086c9
- Revert empty input testing, it really probably should cause a failure
to transfer a non-existent file.
8bd5511
- Better client mapper documentation. b6278b4
0.10.0 (2019-05-06)
- Implement support for Kubernetes two container pod jobs - staging and
tool execution as separate containers in the same job’s pod.
Pull Request 176, Pull Request 178
0.9.0 (2019-04-12)
- Add configuration parameter to limit stream size read from disk. Pull
Request 157
- Pass full job status for failed and lost jobs. Pull Request 159
- Improve message handling if problems occur during job setup/staging. Pull
Request 160
- Rework preprocessing job state to improve restartability and reduce job loss.
This change should be applied while no jobs are running.
Pull Request 164
- Add support for overriding config through environment variables (thanks to
@nuwang). Pull Request 165
- Minor docs updates (thanks to @afgane). Pull Request 170
- Python 3 fixes in Pulsar client (thanks to @mvdbeek). Pull Request 172
0.8.3 (2018-02-08)
- Create universal wheels to enable Python 3 support when installing from PyPI
(thanks to @nsoranzo).
Pull Request 156
0.8.0 (2017-09-21)
- Support new features in Galaxy job running/scripting so that Pulsar respects
$GALAXY_VIRTUAL_ENV and $PRESERVE_GALAXY_ENVIRONMENT. Fix remote
metadata in cases where the tool environment changes the python on
$PATH. Pull Request 137
- Precreate Galaxy tool outputs on the remote before executing (fixes a bug
related to missing output files on stage out). Pull Request 141
- Support the remote_transfer file action without setting the
jobs_directory destination param Pull Request 136
- Fix invalid character in job managers documentation (thanks to @mapa17).
Pull Request 130
- Fix
conda_auto_* option resolution and include a sample
dependency_resolvers_conf.xml (thanks to @mapa17). Pull Request 132
- Fix tox/Travis tests. Pull Request 138, Pull Request 139,
Pull Request 140
- Fix a bug with AMQP acknowledgement. Pull Request 143
0.7.2 (2016-08-31)
- Fix bug causing loops on in response to preprocessing error conditions.
0.7.1 (2016-08-29)
- Do a release to circumvent a tool version logic error in Galaxy (
released Galaxy versions think 0.7.0 < 0.7.0.dev3).
0.7.0 (2016-08-26)
- Update Makefile to allow release pulsar as an application and a library
for Galaxy at the same time.
- Small update to test scripts for TravisCI changes.
- Improvements for embedded Galaxy runner. (TODO: fill this out)
- Remove support for Python 2.6. 60bf962
- Update docs to describe project goverance and reuse Galaxy’s
Code of Conduct. 7e23d43, dc47140
- Updated cluster slots detection for SLURM from Galaxy. cadfc5a
- Various changes to allow usage within Galaxy as a library. ce9d4f9
- Various changes to allow embedded Pulsar managers within Galaxy.
ce9d4f9, d262323, 8f7c04a
- Introduce a separate working and metadata directory as required for
Galaxy 16.04 that requires this separation. 6f4328e
- Improve logging and comments. 38953f3, a985107, ad33cb9
- Add Tox target for Python 2.7 unit testing. d7c524e
- Add
Makefile command for setup.py develop. fd82d00
0.6.1 (2015-12-23)
- Tweak release process that left 0.6.0 with an incorrect PyPI description page.
0.6.0 (2015-12-23)
- Pulsar now depends on the new
galaxy-lib Python package instead of
manually synchronizing Python files across Pulsar and Galaxy.
- Numerous build and testing improvements.
- Fixed a documentation bug in the code (thanks to @erasche). e8814ae
- Remove galaxy.eggs stuff from Pulsar client (thanks to @natefoo). 00197f2
- Add new logo to README (thanks to @martenson). abbba40
- Implement an optional awknowledgement system on top of the message queue
system (thanks to @natefoo). Pull Request 82 431088c
- Documentation fixes thanks to @remimarenco. Pull Request 78, Pull Request 80
- Fix project script bug introduced this cycle (thanks to @nsoranzo). 140a069
- Fix config.py on Windows (thanks to @ssorgatem). Pull Request 84
- Add a job manager for XSEDE jobs (thanks to @natefoo). 1017bc5
- Fix pip dependency installation (thanks to @afgane) Pull Request 73
0.5.0 (2015-05-08)
- Allow cURL downloader to resume transfers during staging in (thanks to
@natefoo). 0c61bd9
- Fix to cURL downloaders status code handling (thanks to @natefoo). 86f95ce
- Fix non-wheel installs from PyPI. Issue 72
- Fix mesos imports for newer versions of mesos (thanks to @kellrott). fe3e919
- More, better logging. 2b3942d, fa2b6dc
0.4.0 (2015-04-20)
- Python 3 support. Pull Request 62
- Fix bug encountered when running
pulsar-main and pulsar-config commands as scripts. 9d43ae0
- Add
pulsar-run script for issues commands against a Pulsar server (experimental). 3cc7f74
0.3.0 (2015-04-12)
- Changed the name of project to Pulsar, moved to Github.
- New RESTful web services interface.
- SCP and Rsync file staging options added by E. Rasche. Pull
Request
- Allow YAML based configuration.
- Support for more traditional
pip/setup.py-style
installs.
- Dozens of smaller bugfixes and documentation updates.
0.2.0
- Last version named the LWR - found on BitBucket.
- Still supported in Galaxy as of 15.03 the release.
- Introduced support for submitting to various queueing systems,
operation as a Mesos framework, Docker support, and
various other advanced deployment options.
- Message queue support.
- Framework for configurable file actions introduced.